The dead scallops being removed may help you out with your ammonia problem, it sounds like they were in the process of decaying. I didn't catch it in the other thread, but I'm assuming this is a mini cycle, I would just wait it out. If you don't want to do that, I would recommend a 25% water change, running some activated carbon, and don't feed the tank for a day or two.
If you have a protein skimmer, run it a little wet for a week or so.