It could be an "acclimation period", but I think it is something else.
I did this same thing on my first set-up. I had damsels and clowns in my tank. My damsels would eat, my clowns would not. I lost 3 clowns before I removed the damsels. After removing the damsels, I didn't lose any more clowns.
Damsels are very terretorial and do not like other tank inhabitants, in general. They will attack fish larger than them, and other damsels.
If you want to keep the damsels, consider making the tank a damsel only tank. If you want to keep the clowns, I would definitely remove the damsels.
Damsels are very tough fish. There is one member who posted in another link that he hasn't fed his damsel in 5 months and its still alive! I don't think you can safely say the same thing about a clown.