If the water in your main tank is in good condition, I would take out half the water in the water tank and replace it with water from your tank. Then use the water you take from the water tank to replace the water you took out from your main tank....can you follow that? LOL
Yes, you do need to treat all your fish, but not your inverts. You do not need to medicate. The best treatment for ick is hyposalinity. Here is the procedure:
O.S.T. stands for Osmotic Shock Therapy which is commonly referred to in the hobby as hyposalinity [water that is deficient in sea salt]. Essentially, O.S.T. simply places the infectors [Cryptocaryon parasite---ick] in an environment in which they cannot survive while the host, (or infected fish) can. This remedy WILL NOT work in reef systems or invert tanks as it incorporates lowering the specific gravity of the entire system [hospital tank] to 1.009. Inverts, corals, live rock and sand can not tolerate this lowered salinity level.
Dropping the salinity is accomplished just as you would do a normal water change. However, you are simply replenishing your tank with fresh RO/DI water---not salt water. Monitor the lowering closely so as to not reduce it too fast. Usually over a period of 48 hours is fine. The bacteria colony which is the biological support for your tank will survive; the fish will survive, but the ich will not. By lowering the salinity, you will also be lowering the osmotic pressure of the water. Fish tolerate this treatment very well, in fact, once the water becomes hyposaline, you will likely note a significant improvement in your fishes' health and appetite. There is no reason to fear this treatment.
Your goal is to drop the specific gravity to 1.009 [48-hrs] gradually. Once all signs of the parasite are gone, then keep your fish in this hypo-saline condition for 3-4 wks. If all is well, then you can gradually [over the course of 4-5 days] bring the specific gravity [salinity] back up to normal levels . If all is well after a week, then return the fish to their main tank.
When the fish are eating, offer them quality and varied food soaked in garlic.