There are many discussions about this, such as the extent too which skimmers pull out a lot of potential food for corals. and I think the discussion is really aimed at coral tanks.
For fish only tanks...I'm not sure you could over filter it too much. Even with a skimmer, wet dry, refugium w/macro, uv, ozone...think you would still be ok!
But corals and other filter feeders do benefit from a lot of the stuff that some filters or water treatment equipment would potentially remove,IMO
So the answer is, it depends