Looks to me like possible tissue necrosis. Has it been waxing for a prolonged period of time? It doesn't look like any of your livestock could have caused a problem.
"Leather Coral, Condition 1 may happen separately from or in conjunction with the regular surface-sloughing sessions seen in the genera Sinularia, Sarcophyton, Lobophytum, etc. Although many new hobbyists become needlessly worried when a leather coral begins a normal shedding period that makes it appear that the coral is dying, this condition is potentially a serious problem. The polyps and tissue of the coral stop expanding and turn a darker color. At some point, after a prolonged unexpanded state that may last several weeks, the tissue becomes cheesy and degenerates, rather than renewing. The coral exhibits local areas where holes and rotting tissue begin to appear on the capitulum or stalks, and these progress outward. This condition occasionally occurs in healthy, fully expanded corals, usually of the Sarcophyton genus.
Although the explanation in otherwise healthy specimens is harder to validate, it may be that a prolonged sloughing period is a result of poor tank conditions or stagnant water flow. With a protracted period of time in which the coral does not feed or photosynthesize in a normal manner because of its shrunken state, the nutritive/energy status of the coral becomes compromised and allows degenerative areas to develop. There may also be specific chemical or mechanical stimuli such as detritus, debris, or additives that create a locally noxious or anaerobic area. In such an area, tissue stress would be followed by necrosis caused by bacteria or other agents. Fortunately, this condition is treatable in many cases. Lugol's and freshwater dips may be of value in some cases, as the superficial necrosis is susceptible to the antiseptic properties of the dips. Simple excision of the affected areas and reliance on the remarkable healing powers of these particular leather-type soft corals is also quite successful in stopping the progression of the malady. Although these procedures may work well, they have the disadvantage of treating the outward signs and not the cause." Aquarium Corals, Borneman,pg 386.