The pump impeller will not take out as many as you think, that is a common misconception, short of the refuge gravity feeding back to the tank, it can't really be avoided. The ones that do get killed, still provide food for your fish and corals too!!
Another way to get them in and out is on rocks, put small rocks 4-6 inches in the refuge or breeder tank with the pods then just rotate them back and forth to the display, they will get a free ride to the display that way!
Bill