I like crushed coral and never really had any major problems with it. It's good to vacuum it out once every three months or so - you can't just let it sit and accumulate nutrients. In fact, one time I used a 1.5" layer of crushed coral on the bottom of the tank and then put about 4" of live sand on top of that... it created your basic plenum system without the PVC pipes (Jaubert system, if your interested) the anaerobic zones in the deeper substrate was able to effectively break down waste. That doesn't mean that you don't have to occasionally maintain your sandbed by adding new live sand and other microinverts to help keep the sandbed from becoming stagnant. Obviously it is better if you do a deep sand bed in a separate aquarium/container such as a refugium.