There are two possible things you were reading about. The first is the least likely, and more simple possibility. If canister filters are not maintenenced often and detritus is allowed to build up, this will decay leaching toxins.
What you most likely were reading about does not pertain to canister filters only, but rather to many "artificial" biological filters, of which a canister can be used if filled with any biomedia. The theory is that these filters are extremely efficient in converting ammonia to nitirite to nitrate aerobically. However this is where they stop, leaching the final product nitrate back into the tank where it builds to higher and higher levels. The new school of thought uses live rock as the biological filter. While not as efficient, it is more complete in that the end product nitrate is converted within the live rock to nitrogen gas right along side the aerobic bacteria feeding it the converted wastes. Ammonia and nitrites are converted more slowly, but one would never notice as they never reach testable levels.
This is at least the theory. Canister filters are still a great resource, even with the new school "Berlin method", as they may be used primarily as a mechanical filter removing suspended matter or a chemical filter. Make sure to clean it often though before those wastes break down.
Hope this helps.