I had a similar problem the other day. I have been cycling my tank and had really expected it to be done.
I saw the ammonia spike up, then fall off.. then nitrates spiked off the charts.. then tracked them on their way down. My last testing (1wk ago) showed ammonia at .25 (not sure why), nitrate at .25 (was on way down), and nitrate at 10ppm.
THIS tells me.. there is bacteria that is both consuming the ammonia and nitrite - thus producing the nitrate. Except for the trace of ammonia - this seemed quite normal for the initial cycle.
However - 1 week later... i am reading 0 nitrites and 20 nitrates - which is perfect. I know i need to do a 50% water change at the end of an initial cycle - and this shows nirtites are being converted - thus the "END" of the cycle.
HOWEVER - my ammonia took a readin go 4-5ppm! WHOA! What's going on here?
Now, the night before i DID overfeed. I only have 6 sm damsels, ive been feeding flake food. They had already eaten for the day - but I had a house sitter over that wanted to know how much they needed to be fed. Dummy me, showed em and put in a tad too much - fish were half asleep as it was - so i'm SURE that was part of it. But would this cause a spike up to 4-5ppm????
And if so, in such an ammonia spike - if u have an esablished system of bacteria - shouldn't this stimulate their growth and "QUICKLY" return it to 0 (granted increasing ur nitrate levels) since ur bio media is not starting from scratch?
I hate to go zebra hunting... but I wondered as well.. is it possible to have lagging ammonia due to improper currents in the tank? Not INSUFFICIENT flow, but IMPROPER currents? ie, a constant cycling of the 'same' water in circles rather than getting an actual TURNOVER of all the water? Or does simple water displacement guarantee a full turnover???
The reason i ask, i notice when i place something floating in the top - it doesn't usually make it to the overflow - but circles around the tank. I have PLENTY of current/flow.
ALSO - my overflow has 2 sponges in it (filters for debris). Is it possible that these capture things that slowly decay - actually grow bacteria on the sponges that are in a constant produce/die off - thus producing cyclings of ammonia - that appear as a low .25 constant reading?? My tank is an older reef style - it has a small overflow box in 1 corner - water overflows into it - it's drilled in the bottom, but has a tall piece of mesh plastic for water to flow into it - w/2 spong filters around it. I think this may be a little different that some of the large units i've seen on others tanks.