You may still get this accumulation in pores of rocks even with flow. Not abnormal, IMO. YOu might have to blow so much current at the rocks as to make any corals or whatever unhappy to keep it off. Just keep doing what you are doing, IMO, or using a turkey baster to blow it out now and then.
This stuff is various waste, some of which would include bacteria, etc that comes out of LR and critters. It is normal.