It runs 24/7, I wanted to make sure the red and green algae is really Coralline, it sure is, I have antennas coming out of the live rock at night, you may have small plankton or something like brine shrimp. Here’s the reality, green algae, everywhere is bad, means phosphates, nitrates, and silicate exists at levels that are too high. It will smother the live rock, and make it into dead rock. I don't think you should have any worries, its for the greater good and its sure sounds like you need it. That and a good quality skimmer I just use a Prizm, the quality of the water will improve "if" you only use RO or distilled for evaporation and water changes. Its just the basic facts on reef keeping, even for just fish tanks. The same principles are also for fresh water.
The natural way is to have a refugium in a sump (low flow 24/7 light) and you grow macro algae like fresh water plants that remove phosphates and nitrates. In both instances then just a couple turbo snails can clean a tank "nice". I think what you described must be the size of a pin dot. I had prawn breeding on the glass once; it was like watching cells under a micro scope. Yes, you need basic maintenance and preventive measures, they call it husbandry.