When the stuff in the collecting cup is so repulsive that you wouldn't offer it to your ex-wife, then the skimmer is broken in. After that, you want the foam into the funnel, but not continuously flowing out into the collecting cup. The principle here is that the surface of the bubbles contain precipitated proteins that stabilize the bubbles. At first the concentration of protein is low, and the foam is semi-liquid. However, as the bubbles break at the top of the column, they deposit the proteins on the bubbles coming behind, increasing the protein concentration, and the bubbles break again, etc., until the bubbles have enough protein to fully stabilie themselves, at which point a semi-dry, stable foam emerges from the cone into the collecting sup.
While this is going on, the skimmer itself is breaking in by having a fine layer of protein form on the plastic surfaces, allowing the foam to flow past without breaking.