Where your water level is now while your return pump is running with a marker. Then turn your pump off. Let the sump completely fill until it stops. Then, measure that line. Take a tape measure or other measuring device and measure the difference. Then, start at 1" below the top of your sump and make a mark. Then, take that measurement and make another mark at the bottom. That's the maximum fill level of your sump. If the max fill level of your sump is still underneath your bioballs, then don't do it. If it is way above - then just fill the sump up level with the balls - or even a half an inch higher.
It would also be good if you could put a lot of live rock under the bioballs, as well as a large foam block. But, keep in mind that you will have to maintain any filtration media - including biological filtration media like those bioballs and live rock rubble and sponges - so that they don't build up excessive amounts of detritus and become nitrate polluters.