I've been having terrible problems with my NitrAtes (young tank). What I found out was that my Fluval is a host for crap that turns into NitrAtes. So, since I have plenty of LR (70+ in a 50 gal) and a DSB to host bacteria, I keep the Fluval cleaned out and will get rid of it when I build my sump. I also do 10 gal of water change each week.
Also, My LR was sitting on a lot of sand. Less sand than the rest of the tank, but still too much. Crap filtered down under the rocks and well... So, besides the powerheads I have behind the rock, I am now elevating them on frags, etc. so that hermits, circulation and the like can sift through the waste under the rock.
I'll let ya know how it works out. I'm only guessing that this has been a big part of my NitrAte problem, besides it being a fairly new tank (end of cycle).