Hi MMYNC. Its all about preferance. But with the pump you curently own the mags are better in the water for a few reasons. there quieter, but more importantly the creat less heat in water then inline. you don't want to heat up your water with your pump.
personally I prefer inline water pumps. I use a little giant which is external only. But with the pump you have in the water is best. If you want to go inline then get a diferent pump.