IMO, the biological filter is not in the tank water, it is on surfaces. Doing water changes is not a risk in this regard, IMO, if you are not doing major cleaning on your filter at the same time.
The risk is the instability between specific gravity, temp, pH, alkalinity, etc. These parameters if not matched with your tank water can cause significant stress to the inhabitants of your tank.
IMO, you can do a 100% WATER change on your tank and not have any issues with the biological filter if you are not disrupting the sand bed and rocks, etc. If you do all bets are out the door.
IMO, I do not recommend a sand sifter like a goby, which is eating beneficial microfauna in the tank. This is true also of sand sifter stars. Other sand sifters like certain snails and cucumbers are considered beneficial and do not eat the microfauna in the sand.
The use of multiple frequent water changes, especially if large volumes, must be weighed against the benefits. My tank recently was on the verge of a crash due to lack of maintenance. I was forced to do multiple frequent and drastic water changes to prevent an event that would have been worse.
However, the reality is that these problems are caused by maintenance, stocking, and feeding and the addition of another fish may not resolve the problem - just hide it - where it will crop up in another form.
Even with ocean water you will want to ensure temp and other parameters are basically equivalent to prevent shock. But as far as removing bacteria, etc, I do not personally believe it is an issue.
This is why you can not generally start a new tank using old tank water and new media. That tank will cycle...whereas using new (or old) tank water and established biomedia (live rock, bioballs, etc from an established tank) can eliminate or minimize a cycle.
All is JMO though